Quantcast
Connect with us

On the front lines of developing a test for the coronavirus

Published

on

“That escalated quickly!” is a common trope used in popular culture to describe when a situation gets out of hand before you’ve even had a chance to think about it. We don’t often use this trope in medicine, but I can think of nothing better to describe what has been going on in the U.S. with the coronavirus outbreak.

I am a physician scientist who practices infectious disease medicine and runs a research laboratory that specializes in viruses. I spend much of my time directing a clinical microbiology laboratory for a large academic medical center. If you’ve ever had a doctor tell you that they are going to test you for a virus, it’s teams like mine that develop and run that test.

ADVERTISEMENT

When I first heard about the coronavirus outbreak in China, I had no idea I would soon be on the front lines of dealing with this outbreak.

Why testing is at the heart of the problem

Let me start by describing exactly what this virus is. It’s a novel virus from the coronavirus family and is spread by respiratory droplets (like when you sneeze) and contact with contaminated surfaces. The “common cold” is usually caused by rhinoviruses, but there are four coronaviruses that also cause colds.

The SARS outbreak of 2003 resulted in 774 deaths and the MERS outbreak of 2012 resulted in 858 deaths; both were caused by novel coronaviruses. The ease of spread of this new virus – called SARS-CoV-2 – has led to its rapid emergence across the globe, with more than 5,000 deaths and counting. Although there are drugs in development and testing phases, there are no drugs currently available that are proven effective against severe coronavirus illnesses.

For the most part, public health officials don’t know who in the U.S. has it because there isn’t a method to test most of the population for it. If you don’t know who has a disease, it’s impossible to predict its spread, how many people will get it, or how many people may die from it. Testing in the U.S. must be expanded, which a number of companies are working on, to reveal the scope of the problem.

How the US lagged behind

Earlier this year, the Centers for Disease Control and Prevention developed a rapid test for SARS-CoV-2. This test is designed to amplify and detect the genetic material in the virus – its RNA (ribonucleic acid) – from your body. It targets certain conserved RNA sequences in the virus that are different from those found in other coronaviruses. The problem is that for a population of 331 million, a single testing center wasn’t nearly enough. The CDC enabled state public health labs to use their test, but this still hasn’t been enough to meet population needs.

ADVERTISEMENT

The Centers for Disease Control and Prevention decided to make its own coronavirus testing kit but the first release was flawed, one of a number of reasons for inadequate availability of testing in the early stages of the pandemic.
CDC via AP

The testing deficiency leaves much of the U.S. population out in the cold. It’s now up to companies, hospitals and academic centers to pick up the slack. Part of the delay was due to what happened during the Zika virus outbreak of 2015, when laboratories that developed their own tests were halted by the FDA because they did not have approval.

Testing development really picked up Feb. 29 after the FDA relented and released guidance for developing tests in individual laboratories, and a free-for-all ensued. We laboratory directors were on the spot to develop tests, and most were unprepared to say the least. Test development typically takes months.

Labs use what is called a reverse-transcription polymerase chain reaction, or RT-PCR, to test a sample taken with a swab from the back of someone’s throat and/or nose. The tests work by converting the virus’ RNA to DNA and then replicating it millions of times in order to amplify its presence and then detect its genetic sequence. If it is detected, a patient is infected.

ADVERTISEMENT

Even with the FDA guidance, we had to decide what RNA sequences in the virus to target and how quickly we could get reliable testing materials. We could only obtain materials for RNA amplification and detection from the CDC or private industry, who were all being bombarded with our requests simultaneously. We laboratory directors were suddenly competing with one another for limited resources to develop these tests.

ADVERTISEMENT

What went wrong?

If you compare our ability to ramp up testing to that observed in China and South Korea, the U.S. response was not up to par. Both countries allowed companies to develop and distribute tests from an early stage, permitting large portions of their populations to be tested.

Part of the problem in the U.S. is the lack of centralized facilities across the country that all have the same equipment to run complex tests. Just in the state of California alone where I live, there are hundreds of hospitals, most with significant differences in their equipment and testing capabilities. When the CDC made their test available, my first thought was, “We don’t even have the equipment to run this test.” Most hospitals in my state and across the country faced this exact same dilemma: a lack of proper equipment and difficulty obtaining adequate testing materials.

Also, problems with CDC-manufactured testing kits arose immediately and caused testing failures when they first released them in February. These failure stories motivated many of us to either develop tests based on our own analysis of COVID-19, or to partner with industry in the development of their tests. At my institution, we’ve been working with industry partners and accelerating the development of their tests for our patient populations.

ADVERTISEMENT

Why it’s not the end of the world

There’s a lot of negatives to find in the response to the coronavirus outbreak, but the flaws in the response represent learning opportunities. Highly infectious viruses in a connected world won’t stay contained for long. Our assumption should have been that it would make it to the U.S. from the onset.

The next time there’s an outbreak, we laboratory directors won’t be waiting for the government to give us the green light to develop diagnostic tests. We’ll do it on our own and press the FDA to allow us to use it. The hard work to ramp up testing in the U.S. is the most significant effort in which I have ever taken part. If you could see the efforts of companies, academic centers, and hospitals right now in the U.S., you’d walk away with optimism that we’re up to the task.

[Deep knowledge, daily. Sign up for The Conversation’s newsletter.]The Conversation

David Pride, Associate Director of Microbiology, University of California San Diego

ADVERTISEMENT

This article is republished from The Conversation under a Creative Commons license. Read the original article.


Report typos and corrections to: [email protected].
READ COMMENTS - JOIN THE DISCUSSION
Continue Reading

2020 Election

US military brought in to monitor police brutality protests in 7 states: leaked documents

Published

on

According to an exclusive report from The Nation, based upon Defense Department documents, U.S. military members are being dispatched to seven different states to monitor the activities of Americans who have taken to the streets to protest the death of George Floyd at the hands of four former Minneapolis cops.

The report, by the Nation's Ken Klippenstein, notes that states include, "Minnesota, where a Minneapolis police officer killed George Floyd, the military is tracking uprisings in New York, Ohio, Colorado, Arizona, Tennessee, and Kentucky, according to a Defense Department situation report," with the author pointing out, "Notably, only Minnesota has requested National Guard support."

Continue Reading

Breaking Banner

‘Absolute vacuum in leadership’: Internet shreds ‘coward’ Trump for hiding as 75 cities protest

Published

on

President Donald Trump is under fire Sunday after the White House announced he will not be seen today despite five days and nights of protests in more than 75 cities across the country and governors in at least ten states activating the National Guard.

Possibly more than at any time during his three-and-a-half year old administration Trump is taking tremendous criticism for how he has managed the ongoing coronavirus pandemic and for his handling of the protests against the killing by police of George Floyd.

Continue Reading
 

Breaking Banner

Trump boasts he’s about to declare Antifa a ‘Terrorist Organization’

Published

on

Donald Trump took to Twitter on Sunday morning to announce that he will be "designating ANTIFA as a Terrorist Organization."

The brief tweet followed several others blaming violence at George Floyd protests on the loosely organized group of anarchists.

The president wrote, "The United States of America will be designating ANTIFA as a Terrorist Organization."

You can see the tweets below:

The United States of America will be designating ANTIFA as a Terrorist Organization.

— Donald J. Trump (@realDonaldTrump) May 31, 2020

Continue Reading
 
 
You need honest news coverage. Help us deliver it. Join Raw Story Investigates for $1. Go ad-free.
close-image